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資源導(dǎo)航

  • 資源導(dǎo)航
  • Comparative genomics
1. ERGO Genome Analysis and Discovery System
ERGO provides a systems-biology informatics toolkit centered on comparative genomics to capture, query and visualize sequenced genomes. Building upon the most comprehensive genomic database available anywhere integrated with the largest collection of microbial metabolic and non-metaboli...
標(biāo)簽：Metabolic reconstruction,Phylogenetics,?Comparative genomics,?SNP Annotation,?SNP discovery,?Alignment,?Exome analysis,?Metagenomics,Pathway analysis,?Comparative transcriptomics,?Functional Genomics,?Gene Expression Analysis,?Genome Wide Association Stud
2. Tablet
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments. Tablet is a lightweight, high-performance graphical...
標(biāo)簽：Genomics,?Genotyping,Comparative genomics
3. LAST
Short read alignment program incorporating quality scores
標(biāo)簽：Genomics,?Comparative genomics
4. Omixon Variant Toolkit
Omixon Target Standard, Target HLA and Target Pro are designed to help clinical, diagnostic and research labs to efficiently get the maximum accuracy and precision from their targeted NGS data.
標(biāo)簽：Comparative genomics,?Mapping,Sequence analysis,?Read alignment,?InDel discovery,SNP discovery
5. DIAL
A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome.
標(biāo)簽：SNP discovery,?Comparative genomics
6. Sim4cc
Cross-species spliced alignment of ESTs to genomes
標(biāo)簽：RNA-Seq Alignment,?Comparative genomics
7. GenomeView
GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Man...
標(biāo)簽：Genomics,?Comparative genomics,?Comparative transcriptomics,Transcriptomics,?Gene annotation retrieval,?Quality Control,?Sequencing,?Sequence analysis
8. BLAST Ring Image Generator
"BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. "
標(biāo)簽：Comparative genomics
9. Kissnp
kisSnp compares two sets of NGS raw reads, detecting Single Nucleotide Polymorphism occurring between the two sets. The two sets typically come from the sequencing of two individuals from the same species or from closely related species.
標(biāo)簽：Comparative genomics,Comparative transcriptomics,Gene annotation retrieval,?SNP discovery,?InDel discovery
10. FHiTINGS
"FHiTINGS is designed for use in rapidly identifying, classifying, and parsing internal transcribed spacer (ITS) DNA sequences after a BLASTn search. This software is useful for fungal ecology studies using next generation sequencing (NGS)."
標(biāo)簽：Metagenomics,?Comparative genomics
11. circos
Circos is tool for visualizing data in a circular format. It was developed for genomic data but can work for many other kinds of data as well. Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for explor...
標(biāo)簽：Comparative genomics
12. DiscoSnp
discoSnps?: qualitative de-novo SNP caller. Extremely low memory and time efficient. No reference genome needed. Call both homozygous and heterozygous SNPs.
標(biāo)簽：Population Genomics,Comparative genomics,Barcoding,?DNA-Seq,?De novo assembly,?Genotyping,?High-throughput sequencing
13. Easyfig
Genome comparison figure generator
標(biāo)簽：Comparative genomics
14. KBASE
"KBase provides a computational framework and tools for integrating and analyzing large, diverse datasets generated by the scientific community to advance predictive understanding, manipulation, and design of biological processes in an environmental context. The purpose of KBase is to e...
標(biāo)簽：Comparative genomics
15. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
標(biāo)簽：Allele-specific transcription,DNA methylation,?DNA-Seq,InDel discovery,?SNP discovery,?Structural variation,?RNA-Seq,?Small RNA transcriptome,?ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics,?Genomics,Personal genomics,?Population ge